PlantTFDB -- Plant Transcription Factor Databases
What you can do:
A comprehensive plant transcription factor database.
Highlights:
- Contains 26,402 TFs predicted from 22 species, including five model organisms with available whole genome sequence and 17 plants with available EST sequences.
- Extensively annotated at both family and gene levels and a brief introduction and key references are presented for each family.
- Functional domain information and cross-references to various well-known public databases were available for each identified TF.
- In addition, we predicted putative orthologs of those TFs among the 22 species.
- PlantTFDB has a simple interface to allow users to search the database by IDs or free texts, to make sequence similarity search against TFs of all or individual species, and to download TF sequences for local analysis.
Keywords:
- plant proteins
- transcription factors
- Arabidopsis
- Poplar
- Oryza sativa
- Chlamydomonas reinhardtii
- Physcomitrella patens
Literature & Tutorials:
This record last updated: 04-15-2008