CressExpress -- Co-expression analysis for Arabidopsis
What you can do:
A tool for large-scale mining of expression data from Arabidopsis.
Highlights:
- CressExpress computes patterns of correlated expression between user-entered query genes and the rest of the genes in the genome.
- It allows characterization of tissue-specific coexpression networks through user-driven filtering of input data based on sample tissue type.
- CressExpress also performs pathway-level coexpression analysis on each set of query genes, identifying and ranking genes based on their common connections with two or more query genes.
- This allows identification of novel candidates for involvement in common processes and functions represented by the query group.
- Users launch experiments using an easy-to-use Web-based interface and then receive the full complement of results, along with a record of tool settings and parameters, via an e-mail link to the CressExpress Web site.
- Data sets featured in CressExpress are strictly versioned and include expression data from MAS5, GCRMA, and RMA array processing algorithms.
Keywords:
- Arabidopsis
- Glucosinolates
- Glucosyltransferases
Literature & Tutorials:
This record last updated: 11-26-2008