KUPS - University of Kansas Proteomics Service
What you can do:
Build datasets to predict protein-protein interactions.
Highlights:
- KUPS provides high-quality protein-protein interaction (PPI) data for researchers developing and evaluating computational models for predicting PPIs by allowing users to construct ready-to-use data sets of interacting protein pairs (IPPs), non-interacting protein pairs (NIPs) and associated features.
- Multiple filters and options allow the user to control the make-up of the IPPs and NIPs as well as the quality of the resultant data sets.
- Each data set is built from the overall database, which includes 185 446 IPPs and ∼1.5 billion NIPs from five primary databases: IntAct, HPRD, MINT, UniProt and the Gene Ontology.
- The IPP set can be set to specific model organisms, interaction types and experimental evidence.
- The NIP set can be generated using four different strategies, which can alleviate biased estimation problems.
- Multiple features can be provided for all of the IPP and NIP pairs.
- KUPS provides two benchmark data sets to help researchers compare their algorithms to existing approaches.
Keywords:
- protein-protein interaction
- PPI
- non-interacting protein
- interacting protein pairs
- protein dataset
Literature & Tutorials:
This record last updated: 06-14-2011