Pathway Analysis

This 3-hour hands-on workshop introduces open access and commercial biological pathway informatics tools. Learn how to mine a list of differentially-expressed genes associated with a disease of interest by searching the NCBI Gene Expression Omnibus (GEO) using the library-licensed tool Correlation Engine.  Then uncover the biology hidden behind the extracted gene list by searching protein-protein interactions and literature-curated gene/protein knowledgebases using pathway informatics software, including Ingenuity Pathway Analysis (IPA) and MetaCore.

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