The Jpred 3 secondary structure prediction server
What you can do:
A secondary structure prediction server powered by the Jnet algorithm.
Highlights:
- The recently updated Jnet algorithm provides a three-state (alpha-helix, beta-strand and coil) prediction of secondary structure at an accuracy of 81.5%.
- Given either a single protein sequence or a multiple sequence alignment, Jpred derives alignment profiles from which predictions of secondary structure and solvent accessibility are made.
- The predictions are presented as coloured HTML, plain text, PostScript, PDF and via the Jalview alignment editor to allow flexibility in viewing and applying the data.
- The new Jpred 3 server includes significant usability improvements that include clearer feedback of the progress or failure of submitted requests.
- Functional improvements include batch submission of sequences, summary results via email and updates to the search databases.
- A new software pipeline will enable Jnet/Jpred to continue to be updated in sync with major updates to SCOP and UniProt and so ensures that Jpred 3 will maintain high-accuracy predictions.
Keywords:
- protein structure prediction
- protein secondary structure prediction
- protein secondary structures
- protein structures
Literature & Tutorials:
PubMed Link: The Jpred 3 secondary structure prediction server
This record last updated: 07-22-2008