PROSPECT-PSPP -- An automatic computational pipeline for protein structure prediction

What you can do:
Fully automate protein structure prediction.
Highlights:
  • The pipeline consists of tools for (i) preprocessing of protein sequences, which includes signal peptide prediction, protein type prediction (membrane or soluble) and protein domain partition, (ii) secondary structure prediction, (iii) fold recognition and (iv) atomic structural model generation. The centerpiece of the pipeline is our threading-based program PROSPECT.
  • The pipeline is implemented using SOAP (Simple Object Access Protocol), which makes it easier to share our tools and resources. The pipeline has an easy-to-use user interface and is implemented on a 64-node dual processor Linux cluster. It can be used for genome-scale protein structure prediction.
  • Registration (free) is required for the use.
Keywords:
  • signal peptide prediction
  • protein domain partition
  • protein secondary structures
  • protein foldings
  • protein structure prediction tool
  • protein structures
Literature & Tutorials:
PubMed Link: PROSPECT-PSPP
This record last updated: 05-11-2005
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