ESPript/ENDscript -- extracting and rendering sequence and 3D information from atomic structures of proteins
What you can do:
Generate multiple sequence alignments adorned with secondary structure elements in high quality PostScript graph.
Highlights:
- The web server ENDscript was created to facilitate the generation of ESPript figures containing a large amount of information.
- ENDscript uses programs such as BLAST, Clustal and PHYLODENDRON to work on protein sequences and such as DSSP, CNS and MOLSCRIPT to work on protein coordinates.
- It enables the creation, from a single Protein Data Bank identifier, of a multiple sequence alignment figure adorned with secondary structure elements of each sequence of known 3D structure.
- The output shows: Secondary Structures;
- Aligned sequences; Similarities Consensus; Accessibility Hydropathy; User-supplied markers; Intermolecular contacts.
Keywords:
- multiple sequence alignment tool
- protein tertiary structures
- protein tertiary structure prediction tool
- protein 3D structure prediction tool
- protein tertiary structure analysis tool
- protein functional signature prediction tool
- protein resistance prediction tool
- protein susceptibility prediction tool
- protein secondary structure assignment tool
- protein secondary structures
- Nuclear Magnetic Resonance data analysis tool
- protein secondary structure prediction tool
- protein structure analysis tool
- protein structure prediction tool
- protein structures
- protein sequence assignment tool
Literature & Tutorials:
This record last updated: 06-09-2005