The HHpred interactive server for protein homology detection and structure prediction
What you can do:
Detect homology and predict structures among distantly related proteins.
Highlights:
- HHpred is a fast server for remote protein homology detection and structure prediction and is the first to implement pairwise comparison of profile hidden Markov models (HMMs).
- It allows to search a wide choice of databases, such as the PDB, SCOP, Pfam, SMART, COGs and CDD.
- It accepts a single query sequence or a multiple alignment as input, and it returns the search results in a user-friendly format similar to that of PSI-BLAST.
- Search options include local or global alignment and scoring secondary structure similarity.
- HHpred can produce pairwise query-template alignments, multiple alignments of the query with a set of templates selected from the search results, as well as 3D structural models that are calculated by the MODELLER software from these alignments.
Keywords:
- protein sequence alignment tool
- protein structure alignment tool
- multiple sequence alignment
- protein homology detection
- protein structure prediction tool
Literature & Tutorials:
This record last updated: 01-05-2021