Haploview -- analysis and visualization of LD and haplotype maps

What you can do:
multiplex tag SNP design SNPs tagging tag SNPs selection tool tag SNPs evaluation tool genome-wide association studies genotyping tool allele frequency estimation Association mapping disease association studies SNPs genotyping haplotype frequencies estimation
Highlights:
  • Haploview is a software package that provides computation of linkage disequilibrium statistics and population haplotype patterns from primary genotype data in a visually appealing and interactive interface.
  • Haploview currently supports the following functionalities:
  • ** LD & haplotype block analysis
  • ** haplotype population frequency estimation
  • ** single SNP and haplotype association tests
  • ** permutation testing for association significance
  • ** implementation of Paul de Bakker's Tagger tag SNP selection algorithm.
Keywords:
  • haplotype block analysis
  • linkage disequilibrium analysis
  • tag SNPs evaluation tool
  • genome-wide association studies
  • genotyping tool
  • allele frequency estimation
  • association mapping
  • disease association studies
  • SNPs genotyping
  • haplotype frequencies estimation
  • multiplex tag SNP design
  • SNPs tagging
  • tag SNPs selection tool
This record last updated: 03-28-2007

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