Haploview -- analysis and visualization of LD and haplotype maps

URL:

http://www.broad.mit.edu/mpg/haploview/

What you can do:

multiplex tag SNP design SNPs tagging tag SNPs selection tool tag SNPs evaluation tool genome-wide association studies genotyping tool allele frequency estimation Association mapping disease association studies SNPs genotyping haplotype frequencies estimation

Highlights:

Haploview is a software package that provides computation of linkage disequilibrium statistics and population haplotype patterns from primary genotype data in a visually appealing and interactive interface.
Haploview currently supports the following functionalities:
** LD & haplotype block analysis
** haplotype population frequency estimation
** single SNP and haplotype association tests
** permutation testing for association significance
** implementation of Paul de Bakker's Tagger tag SNP selection algorithm.

Keywords:

haplotype block analysis
linkage disequilibrium analysis
tag SNPs evaluation tool
genome-wide association studies
genotyping tool
allele frequency estimation
association mapping
disease association studies
SNPs genotyping
haplotype frequencies estimation
multiplex tag SNP design
SNPs tagging
tag SNPs selection tool

Literature & Tutorials:

PubMed Link: Haploview -- analysis and visualization of LD and haplotype maps

This record last updated: 03-28-2007

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