AutoSNPdb -- an annotated single nucleotide polymorphism database for crop plants

What you can do:
Identify SNPs from assembled EST sequences for the crops rice, barley and Brassica.
Highlights:
  • Users may rapidly identify polymorphic sequences of interest through BLAST sequence comparison, keyword searches of annotations derived from UniRef90 and GenBank comparisons, GO annotations or in genes corresponding to syntenic regions of reference genomes.
  • In addition, SNPs between specific varieties may be identified for targeted mapping and association studies.
Keywords:
  • rice
  • barley
  • Brassica
  • Oryza
  • SNP
  • single nucleotide polymorphism
  • crop EST
This record last updated: 01-07-2009

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