ShotgunFunctionalizeR -- R-package for functional comparison of metagenomes
Analyze data from functional analysis on fragmented microbial genetic material.
- ShotgunFunctionalizeR contains tools for importing, annotating and visualizing metagenomic data produced by shotgun high-throughput sequencing.
- It contains several statistical procedures for assessing functional differences between samples, both for individual genes and for entire pathways.
- The tool is based on a Poisson model, which is highly flexible and thus applicable to a wide range of different experimental designs.
- Poisson model
-
metagenome
-
metagenomics
-
microbe
This record last updated: 04-18-2014