RNA sequences
Search for information about mutated positions in 16S and 16S-like ribosomal RNA and 23S and 23S-like ribosomal RNA and the identity of each alteration.
A database of maps showing the sites of modified rRNA nucleotides in three-dimensional models.
Search for information on nucleotide sequences of 5S rRNAs and their genes.
Identify regulatory RNA elements.
Search for activities of the functional sites in DNA and RNA.
View AREs in the human transcriptome and study the comparative genomics of AREs in model organisms.
Locate mitochondrial tRNAs from metazoan species.
Search for comprehensive sequence information on aptamers and unnatural ribozymes that have been generated by in vitro selection methods.
Quickly find sequences of 95% and greater similarity of length 40 bases or more for DNA or 80% and greater similarity of length 20 amino acids or more for protein in a genome.
Find quantitative information on the spatial arrangements of interacting RNA bases.
Assess the protein-coding potential of transcripts using sequence features and support vector machine.
Perform multiple sequence alignment of structured RNA.
Generate a three-dimensional representation for a given RNA or DNA sequence alignment.
Perform the pairwise alignment of two RNA 3D structures.
Search for comprehensive information about group II introns.
Find information about small RNAs from transcriptomic data.
Predict RNA-RNA interaction, perform exact RNA matching and RNA alignments.
Search for information on composition and distribution of putative Quadruplex forming 'G'-Rich Sequences (QGRS) in the alternatively processed (alternatively spliced or alternatively polyadenylated) mammalian pre-mRNA sequences.
Search for information on computationally predicted tRNA genes in various genomes.
Find information about computationally identified transfer RNA genes.
Search for annotated HIV and related SIV DNA and translated amino acid sequences.
Search for sequences of published functional siRNA molecules targeting human genes and associated information.
Search for information about the experimentally studied IRES (Internal Ribosome Entry Site) segments.
Find information about phylogenetic marker ITS2.
A software package which handles the complete process of ncRNA annotation by integrating the layers of automatic detection and human curation.
Program that allows for the visual design of RNA motifs.
An advanced multiple alignment program suite for nucleic sequences.
Predict features in biological sequences.
Align mRNA or expressed sequence tags (EST) and genome sequences.
Search for comprehensive information on RNA modification.
Distinguish between real and pseudo microRNA precursors
Examine the comprehensive database of 16S rDNA prokaryotic multiple sequence alignment.
Compare 16s rRNA genes using multiple sequence alignment.
Search for information to analyze non-coding RNAs.
Find gene expression information about long, non-protein-coding RNAs in human and mouse.
Search for putative 3'-processing sites and 3'-UTR sequences for multiple model organisms.
Perform local alignment for non-coding RNA.
Search for comprehensive information on small nucleolar RNAs in plants.
Find information about plant microRNAs.
Search for information regarding polyadenylation in vertebrate genes.
Search for information on E. coli mRNA promoter sequences and transcriptional start sites.
Search for information on RNA pseudoknots.
Find information about pseudoknots.
Web server for accurately aligning noncoding RNA sequences.
Provides researchers with quality-controlled bacterial and archaeal small subunit rRNA alignments and analysis tools.
Search for information on various RNA editing events.
Differentiate medical microorganisms based on partial small subunit ribosomal DNA (16S rDNA) sequence.
Search for information on experimentally studied mammalian non-coding RNAs (ncRNAs), including many associated with diseases and/or developmental processes.
Find sequences representing genomes, transcripts, and proteins.
Identify both sequence and structure homologs of Regulatory RNA motifs and elements.
Search for sequences and functions of noncoding RNA in various organisms.
Search for multiple sequence alignments and covariance models representing non-coding RNA families.
Search sequences of known and predicted riboswitches and other conserved bacterial regulatory elements.
Search for annotated information on small nucleolar RNAs and cajal body-specific RNAs in many different organisms.
Identify small nucleolar RNAs with unknown targets.
A portal site of web servers and software tools for sequence/structure analysis of non-coding RNAs.
Conduct functional annotation of mRNA transcripts.
Classify the function of tRNAs.
Search for targets of miRNA gene silencing in animals, plants and viruses.
Identify targets of small (non-coding) RNA action.
Conduct and evaluate multiple sequence alignments for protein, DNA and RNA.
Identify related RNA sequences based on RNA sequence alignment.
Search for comprehensive information on SSU (small subunit) and LSU (large subunit) ribosomal RNA sequences, structures, taxonomy, and literature.
Search for post-transcriptionally modified nucleosides and sequence sites in small subunit rRNAs.
To obtain unique names for novel miRNA genes prior to publication of results and to search sequence information of published miRNAs.
Search for tRNA genes and snoRNA genes in genomic sequences.
To search for sequences, alignments, secondary structures and other information on tmRNA.
Perform protein nucleotide sequence alignment.
Search for the 5'- and 3'-untranslated regions (5'- and 3'-UTRs) of eukaryotic mRNAs.
Search for curated information of the known virus miRNA genes and the known/putative target sites of human, mice, rat and chicken miRNAs.
This server utilizes several tools simultaneously to align and predict the common secondary structure of multiple RNA sequences.
Search for information for small nucleolar RNAs (snoRNAs)in yeast.
Search for information of published RNA editing sites.
Search for information on non-annotated/unannotated non-coding mRNA transcripts.
Find information about analysis of sequence and expression of microRNAs.
Search for information about diseases caused by miRNA deregulation.
Find information about microRNAs.
Search for information on the published and predicted miRNA in vertebrate genomes.
Search for animal microRNA genes.
Find information about microRNA-target interactions.
Perform deep-sequence analysis on next-generation sequence experiments.
Search for predicted miRNA targets.
Search for sequence and other information about noncoding regulatory RNAs.
Identify both the clusters of phased small RNAs as well as the potential phase-initiator.
Search for information on human C/D box and H/ACA box small nucleolar RNAs (snoRNAs), and small Cajal body-specific RNAs (scaRNAs).
Find information about microRNA-mRNA interaction maps.
Search for tRNA genes in a genomic sequence.
Find information about prokaryotic tRNA genes.
Find information about transfer RNA.
Search for aligned, annotated and phylogenetically ordered sequences related to structure and function of tmRNA.