RegRNA -- an integrated web server for identifying regulatory RNA motifs and elements
What you can do:
Identify both sequence and structure homologs of Regulatory RNA motifs and elements.
Highlights:
- RegRNA is an integrated web server for identifying the homologs of regulatory RNA motifs and elements against an input mRNA sequence.
- Both sequence homologs and structural homologs of regulatory RNA motifs can be recognized.
- The regulatory RNA motifs supported in RegRNA are categorized into several classes: (i) motifs in mRNA 5'-untranslated region (5'-UTR) and 3'-UTR; (ii) motifs involved in mRNA splicing; (iii) motifs involved in transcriptional regulation; (iv) riboswitches; (v) splicing donor/acceptor sites; (vi) inverted repeats; and (vii) miRNA target sites.
- The experimentally validated regulatory RNA motifs are extracted from literature survey and several regulatory RNA motif databases, such as UTRdb, TRANSFAC, alternative splicing database (ASD) and miRBase.
- A variety of computational programs are integrated for identifying the homologs of the regulatory RNA motifs.
Keywords:
- RNA regulatory structural motif prediction tool
- RNA regulatory structural homolog identification tool
- RNA regulatory sequence homolog search tool
- RNA splice site prediction tool
- miRNA target site prediction tool
Literature & Tutorials:
This record last updated: 07-27-2006