Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis
What you can do:
Identify co-expressed genes based on n a large Arabidopsis thaliana microarray data set.
Highlights:
- The Arabidopsis Co-expression Tool, ACT, ranks the genes across a large microarray dataset (21,800 genes based on data from over 300 arrays) according to how closely their expression follows the expression of a query gene.
- It allows users to identify genes whose expression patterns are correlated across selected experiments or the complete data set.
- Clique Finder (CF) identifies groups of genes which are consistently co-expressed with each other across a user-defined co-expression list.
- In combination, these tools offer three levels of analysis: creation of correlation lists of co-expressed genes, refinement of these lists using two-dimensional scatter plots, and dissection into cliques of co-regulated genes
Keywords:
- Arabidopsis gene co-expression patterns
- gene co-regulation analysis
- Arabidopsis microarray data analysis tool
- Arabidopsis gene expression analysis
- plant gene expression analysis
This record last updated: 04-18-2014