ATTED-II -- a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
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What you can do:
Search for information on predicted Arabidopsis thaliana trans-factor and cis-element and co-regulated gene relationships based on microarray data.
Highlights:
- Arabidopsis thaliana trans-factor and cis-element prediction database (ATTED-II) provides co-regulated gene relationships based on co-expressed genes deduced from microarray data and the predicted cis elements.
- Updates focus especially on functionalities for constructing gene networks with regard to the following points: (i) introducing a new measure of gene coexpression to retrieve functionally related genes more accurately, (ii) implementing clickable maps for all gene networks for step-by-step navigation, (iii) applying Google Maps API to create a single map for a large network, (iv) including information about protein-protein interactions, (v) identifying conserved patterns of coexpression and (vi) showing and connecting KEGG pathway information to identify functional modules.
- With these enhanced functions for gene network representation, ATTED-II can help researchers to clarify the functional and regulatory networks of genes in Arabidopsis.
Keywords:
- Arabidopsis co-expressed gene
- Arabidopsis trans-factor prediction
- Arabidopsis transcription factor prediction
- Arabidopsis cis-element prediction
- Arabidopsis regulatory elements
- Arabidopsis co-regulated gene
- Arabidopsis gene expression
- Arabidopsis gene networks
- Arabidopsis signal transduction
Literature & Tutorials:
This record last updated: 01-06-2009