PhosPhAt -- The Arabidopsis Protein Phosphorylation Site Database
What you can do:
Find information about phosphorylation sites in Arabidopsis thaliana.
Highlights:
- PhosPhAt 3.0 is a database that contains information on Arabidopsis phosphorylation sites which were identified by mass spectrometry in large scale experiments by different research groups.
- Specific information about the peptide properties, their annotated biological function as well as the experimental and analytical context is given.
- For a majority of peptides, the actual annotated mass spectrum is displayed in interactive manner.
- The results output includes interactive visualization of annotated fragmentation spectra and the ability to export spectra and peptide sequences as text files for use in other applications.
- Dynamic links to other web resources have been included. thus augmenting PhosPhAt-specific information with external protein-related data.
- For experimental phosphorylation sites with information about dynamic behavior in response to external stimuli, simple time-resolved diagrams are displayed.
- Predictions were included for pT and pY sites and updated pS predictions.
- Access to prediction algorithm now allows 'on-the-fly' prediction of phosphorylation of any user-uploaded protein sequence. Protein Pfam domain structures are now mapped onto the protein sequence display next to experimental and predicted phosphorylation sites.
- Functional annotation of proteins was implemented using MAPMAN ontology.
Keywords:
- Arabidopsis Proteins
- Phosphopeptides
- Phosphoproteins
- Phosphorylation
- plant
Literature & Tutorials:
This record last updated: 04-28-2010