AtPID -- Arabidopsis thaliana protein interactome database
What you can do:
An integrative platform for plant systems biology.
Highlights:
- AtPID is an object database that integrates data from several bioinformatics prediction methods and manually collected information from the literature.
- It contains data relevant to protein-protein interaction, protein subcellular location, ortholog maps, domain attributes and gene regulation.
- The predicted protein interaction data were obtained from ortholog interactome, microarray profiles, GO annotation, and conserved domain and genome contexts.
- This database holds 28,062 protein-protein interaction pairs with 23,396 pairs generated from prediction methods.
- Among the rest 4666 pairs, 3866 pairs of them involving 1875 proteins were manually curated from the literature and 800 pairs were from enzyme complexes in KEGG.
- In addition, subcellular location information of 5562 proteins is available.
- AtPID was built via an intuitive query interface that provides easy access to the important features of proteins.
- Through the incorporation of both experimental and computational methods, AtPID is a rich source of information for system-level understanding of gene function and biological processes in A. thaliana.
Keywords:
- Arabidopsis genetics
- Arabidopsis proteins
- Arabidopsis metabolism
- Protein Interaction Mapping
This record last updated: 04-10-2008