Ontologizer -- a multifunctional tool for GO term enrichment analysis and data exploration
What you can do:
A tool for statistical analysis and visualization of high-throughout biological data using Gene Ontology.
Highlights:
- The Ontologizer is a Java application that can be used to perform statistical analysis for overrepresentation of Gene Ontology (GO) terms in sets of genes or proteins derived from an experiment.
- The Ontologizer implements the standard approach to statistical analysis based on the one-sided Fisher's exact test, the novel parent-child method, as well as topology-based algorithms.
- The Ontologizer allows users to visualize data as a graph including all significantly overrepresented GO terms and to explore the data by linking GO terms to all genes/proteins annotated to the term and by linking individual terms to child terms.
Keywords:
- Oligonucleotide Array Sequence Analysis
- Ontology
- Gene Ontology
- GO
- High-Throughput
Literature & Tutorials:
This record last updated: 12-1-2008