CentroidFold -- RNA Secondary Structure Predictor
What you can do:
Use to generate a RNA secondary structure from a sequence.
Highlights:
- The CENTROIDFOLD web server is a web application for RNA secondary structure prediction powered by one of the most accurate prediction engine.
- It accepts two kinds of sequence data: a single RNA sequence and a multiple alignment of RNA sequences.
- It responds with a prediction result shown as a popular base-pair notation and a graph representation.
- PDF version of the graph representation is also available.
- For a multiple alignment sequence, the server predicts a common secondary structure.
- The user can paste a single RNA sequence (FASTA or plain sequence text) or a multiple alignment (CLUSTAL-W format) into the textarea then click on the 'execute CentroidFold' button.
- The major advantage of this server is that it employs the original CentroidFold software as its prediction engine which scores the best accuracy in our benchmark results.
Keywords:
- RNA
- RNA structure prediction
- RNA secondary structure
- FASTA
- CLUSTAL-W
Literature & Tutorials:
This record last updated: 09-24-2009